Index

A

a (reborn.target.crystal.UnitCell attribute) a_mat (reborn.target.crystal.UnitCell property) a_mat_inv (reborn.target.crystal.UnitCell property) a_vec (reborn.target.crystal.UnitCell property) add_circle_roi() (reborn.viewers.qtviews.padviews.PADView method) add_density() (reborn.viewers.qtviews.qtviews.Volumetric3D method) add_facet() (reborn.target.crystal.FiniteCrystal method) (reborn.target.crystal.FiniteLattice method) add_frame() (reborn.analysis.parallel.ParallelAnalyzer method) (reborn.analysis.runstats.ParallelPADStats method) (reborn.analysis.runstats.PixelHistogram method) (reborn.analysis.saxs.ParallelRadialProfiler method) (reborn.analysis.saxs.QHistogram method) add_grid() (reborn.viewers.qtviews.qtviews.Volumetric3D method) add_group() (reborn.detector.PADGeometryList method) add_line() (reborn.external.pyqtgraph.ImView method) add_lines() (reborn.viewers.qtviews.qtviews.Scatter3D method) (reborn.viewers.qtviews.qtviews.Volumetric3D method) add_plot() (reborn.external.pyqtgraph.ImView method) add_plot_item() (reborn.viewers.qtviews.padviews.PADView method) add_points() (reborn.viewers.qtviews.qtviews.Scatter3D method) add_rectangle_roi() (reborn.viewers.qtviews.padviews.PADView method) add_rgb_axis() (reborn.viewers.qtviews.qtviews.Scatter3D method) (reborn.viewers.qtviews.qtviews.Volumetric3D method) add_ring() (reborn.viewers.qtviews.padviews.PADView method) add_roi() (reborn.external.pyqtgraph.ImView method) add_row() (reborn.viewers.qtviews.padview_widgets.ring_editor.RingEditWidget method) add_scatter_plot() (reborn.viewers.qtviews.padviews.PADView method) add_unit_cell() (reborn.viewers.qtviews.qtviews.Scatter3D method) addblock_svd_update() (in module reborn.analysis.svd)

adu_per_photon (reborn.external.lcls.AreaDetector attribute) agipd_pad_geometry_list() (in module reborn.detector) all_keys_in_file() (in module reborn.external.hdf5) alpha (reborn.target.crystal.UnitCell attribute) app (reborn.viewers.qtviews.qtviews.Scatter3D attribute) append() (reborn.detector.PADGeometryList method) apply_inverse_symmetry_operation() (reborn.target.crystal.SpaceGroup method) apply_mask() (reborn.viewers.qtviews.padview_widgets.mask_editor.Widget method) apply_symmetry_operation() (reborn.target.crystal.SpaceGroup method) AreaDetector (class in reborn.external.lcls) as_vec (reborn.target.crystal.UnitCell property) assemble_data() (reborn.detector.PADAssembler method) assign_names() (reborn.detector.PADGeometryList method) atleast_1d() (in module reborn.utils) atleast_2d() (in module reborn.utils) atleast_3d() (in module reborn.utils) atleast_4d() (in module reborn.utils) atomic_numbers (reborn.target.molecule.Molecule attribute) atomic_numbers_to_symbols() (in module reborn.target.atoms) atomic_symbols_to_numbers() (in module reborn.target.atoms) au_to_k() (reborn.target.crystal.CrystalDensityMap method) au_x_coms (reborn.target.crystal.FiniteCrystal attribute) auto_beam_checkbox_action() (reborn.viewers.qtviews.padview_widgets.display_options.Widget method) auto_geom_checkbox_action() (reborn.viewers.qtviews.padview_widgets.display_options.Widget method) auto_hist_checkbox_action() (reborn.viewers.qtviews.padview_widgets.display_options.Widget method) auto_mask_checkbox_action() (reborn.viewers.qtviews.padview_widgets.display_options.Widget method) average_detector_distance() (reborn.detector.PADGeometry method) (reborn.detector.PADGeometryList method) azimuthal_angles() (reborn.detector.PADGeometry method) (reborn.detector.PADGeometryList method)

B

b (reborn.target.crystal.UnitCell attribute) b_vec (reborn.target.crystal.UnitCell property) Beam (class in reborn.source) beam (reborn.analysis.peaks.PeakFinder attribute) (reborn.external.euxfel.EuXFELFrameGetter attribute) (reborn.simulate.examples.WaterFrameGetter attribute) beam_editor_widget (reborn.viewers.qtviews.padviews.PADView property) beam_profile (reborn.source.Beam property) beam_vec (reborn.source.Beam property) beamstop_mask() (reborn.detector.PADGeometry method) (reborn.detector.PADGeometryList method) beginDynamicFilter() (reborn.viewers.pandaviews.DataFrameModel method) beta (reborn.target.crystal.UnitCell attribute) BetterDoubleSpinBox (class in reborn.gui.misc.spinbox) bin_centers (reborn.analysis.saxs.RadialProfiler attribute)

bin_edges (reborn.analysis.saxs.RadialProfiler attribute) bin_max (reborn.analysis.runstats.PixelHistogram attribute) (reborn.analysis.saxs.QHistogram attribute) bin_min (reborn.analysis.runstats.PixelHistogram attribute) (reborn.analysis.saxs.QHistogram attribute) bin_size (reborn.analysis.saxs.RadialProfiler attribute) bind_dataframewidget() (reborn.viewers.pandaviews.DynamicFilterLineEdit method) binned() (reborn.detector.PADGeometry method) (reborn.detector.PADGeometryList method) binned_statistic() (in module reborn.utils) boxsnr() (in module reborn.analysis.peaks) bright_colors() (in module reborn.viewers.qtviews.qtviews) bs_vec (reborn.target.crystal.UnitCell property) buffer_mesh_lookup() (reborn.simulate.clcore.ClCore method) build_atomic_scattering_density_map() (in module reborn.target.crystal) (in module reborn.target.density)

C

c (reborn.target.crystal.UnitCell attribute) c_vec (reborn.target.crystal.UnitCell property) cached() (in module reborn.detector) calc_ylmcoef() (reborn.misc.spherical.ylmIntegration method) cancelDynamicFilter() (reborn.viewers.pandaviews.DataFrameModel method) cellClicked (reborn.viewers.pandaviews.DataFrameWidget attribute) center_at_origin() (reborn.detector.PADGeometryList method) center_pos_vec() (reborn.detector.PADGeometry method) centroids (reborn.analysis.peaks.PeakFinder attribute) change_parent_shape() (reborn.detector.PADGeometry method) (reborn.detector.PADGeometryList method) changed (reborn.gui.misc.pen_editor.PenStyleEditor attribute) (reborn.gui.misc.pen_editor.PenStylePreview attribute) character_orders() (in module reborn.gui.misc.spinbox) check_extra_data() (in module reborn.external.euxfel) check_file_md5() (in module reborn.utils) cheetah_cspad_array_to_pad_list() (in module reborn.external.cheetah) cheetah_pnccd_array_to_pad_list() (in module reborn.external.cheetah) CheetahFrameGetter (class in reborn.external.cheetah) choose_mask_color() (reborn.viewers.qtviews.padview_widgets.mask_editor.Widget method) (reborn.viewers.qtviews.padviews.PADView method) ClCore (class in reborn.simulate.clcore) clear_beam() (reborn.viewers.qtviews.padview_widgets.edit_beam.Widget method) clear_cache() (in module reborn.detector) (reborn.dataframe.DataFrame method) (reborn.detector.PADGeometry method) (reborn.detector.PADGeometryList method) clear_masks() (reborn.viewers.qtviews.padviews.PADView method) clear_processed_data() (reborn.dataframe.DataFrame method) (reborn.viewers.qtviews.padviews.PADView method) closeEvent() (reborn.viewers.qtviews.padviews.PADViewMainWindow method) cmann_henke_scattering_factors() (in module reborn.target.atoms) columnCount() (reborn.viewers.pandaviews.DataFrameModel method) (reborn.viewers.qtviews.padview_widgets.ring_editor.RingTableModel method) combine (reborn.viewers.qtviews.padview_widgets.misc.GetMaskFileDialog property) compute_vertices_and_faces() (reborn.detector.IcosphereGeometry method) concat_data() (reborn.analysis.saxs.RadialProfiler method) (reborn.dataframe.DataFrame method) (reborn.detector.PADGeometryList method) concat_pad_data() (in module reborn.detector) concat_vecs() (reborn.detector.PADGeometryList method) concatenate() (reborn.analysis.parallel.ParallelAnalyzer method) (reborn.analysis.runstats.ParallelPADStats method) (reborn.analysis.saxs.ParallelRadialProfiler method)

concatentate() (reborn.analysis.runstats.PixelHistogram method) contextMenuEvent() (reborn.viewers.pandaviews.DataFrameWidget method) convert_to_crystfel_format() (in module reborn.external.crystfel) convert_to_q_histogram() (reborn.analysis.runstats.PixelHistogram method) coordinates (reborn.target.molecule.Molecule property) copy() (reborn.dataframe.DataFrame method) (reborn.detector.PADGeometry method) (reborn.detector.PADGeometryList method) (reborn.source.Beam method) (reborn.viewers.pandaviews.DataFrameWidget method) corner_max (reborn.target.density.DensityMap attribute) corner_min (reborn.target.density.DensityMap attribute) corner_position_vectors() (reborn.detector.PADGeometry method) correct_gain_and_offset() (reborn.analysis.runstats.PixelHistogram method) count (reborn.analysis.runstats.PixelHistogram attribute) (reborn.analysis.saxs.QHistogram attribute) create_density_map() (in module reborn.external.denss) create_some_gpu_context() (in module reborn.simulate.clcore) createEditor() (reborn.viewers.pandaviews.DataFrameItemDelegate method) (reborn.viewers.qtviews.padview_widgets.ring_editor.QPenDelegate method) (reborn.viewers.qtviews.padview_widgets.ring_editor.RingTypeDelegate method) cromer_mann_scattering_factors() (in module reborn.target.atoms) cryst (reborn.target.crystal.CrystalDensityMap attribute) (reborn.target.crystal.FiniteCrystal attribute) cryst1 (reborn.target.crystal.CrystalStructure attribute) crystal_size (reborn.target.crystal.CrystalStructure attribute) crystal_size_fwhm (reborn.target.crystal.CrystalStructure attribute) CrystalDensityMap (class in reborn.target.crystal) CrystalSimulatorV1 (class in reborn.simulate.examples) CrystalStructure (class in reborn.target.crystal) cs_vec (reborn.target.crystal.UnitCell property) cshape (reborn.target.crystal.CrystalDensityMap attribute) cspad_2x2_pad_geometry_list() (in module reborn.detector) cspad_pad_geometry_list() (in module reborn.detector) current_dataframe (reborn.fileio.getters.FrameGetter attribute) current_frame (reborn.external.crystfel.StreamfileFrameGetter attribute) (reborn.fileio.getters.FrameGetter attribute) current_random_frame (reborn.fileio.getters.FrameGetter attribute) current_train_id (reborn.external.euxfel.EuXFELFrameGetter attribute) current_train_stack (reborn.external.euxfel.EuXFELFrameGetter attribute) currentIndexChanged() (reborn.viewers.qtviews.padview_widgets.ring_editor.RingTypeDelegate method) custom_filter() (reborn.viewers.pandaviews.DataFrameWidget method) cxi_path_replace (reborn.external.crystfel.StreamfileFrameGetter attribute)

D

data() (reborn.viewers.pandaviews.DataFrameModel method) (reborn.viewers.qtviews.padview_widgets.ring_editor.RingTableModel method) data_changed (reborn.viewers.qtviews.padview_widgets.ring_editor.RingTableModel attribute) DataFrame (class in reborn.dataframe) dataframe_updated() (reborn.viewers.qtviews.padview_widgets.frame_navigator.Widget method) DataFrameApp (class in reborn.viewers.pandaviews) dataFrameChanged (reborn.viewers.pandaviews.DataFrameWidget attribute) DataFrameItemDelegate (class in reborn.viewers.pandaviews) DataFrameModel (class in reborn.viewers.pandaviews) DataFrameSortFilterProxyModel (class in reborn.viewers.pandaviews) DataFrameWidget (class in reborn.viewers.pandaviews) datatable_updated() (reborn.viewers.pandaviews.DataFrameApp method) dbgmsg() (in module reborn.gui.misc.pen_editor) (in module reborn.viewers.qtviews.padview_widgets.ring_editor) (reborn.analysis.masking.StreakMasker method) (reborn.fileio.getters.FrameGetter method) debug() (reborn.viewers.qtviews.padviews.PADView method) debug_message() (in module reborn.analysis.saxs) (in module reborn.external.euxfel) (in module reborn.external.lcls) default_pen() (in module reborn.viewers.qtviews.padview_widgets.ring_editor) defines_slicing() (reborn.detector.PADGeometryList method) DensityMap (class in reborn.target.density) df (reborn.viewers.pandaviews.DataFrameModel property) (reborn.viewers.pandaviews.DataFrameSortFilterProxyModel property) (reborn.viewers.pandaviews.DataFrameWidget property)

diameter_fwhm (reborn.source.Beam attribute) dict_default() (in module reborn.detector) DirectEditor (class in reborn.viewers.qtviews.padview_widgets.edit_geometry) display_editor_widget (reborn.viewers.qtviews.padviews.PADView property) display_options_widget (reborn.viewers.qtviews.padviews.PADView property) divergence_fwhm (reborn.source.Beam attribute) divide_nonzero_inplace() (reborn.simulate.clcore.ClCore method) divide_profile() (reborn.analysis.saxs.RadialProfiler method) do_cache (reborn.detector.PADGeometry attribute) (reborn.detector.PADGeometryList attribute) do_nothing() (in module reborn.fileio.getters) docs() (in module reborn.utils) double_precision_is_available() (reborn.simulate.clcore.ClCore method) downsample() (in module reborn.external.pyqtgraph) downsample_function (reborn.viewers.qtviews.padviews.PADView attribute) downsampling_action() (reborn.viewers.qtviews.padview_widgets.display_options.Widget method) ds_mags() (reborn.detector.PADGeometry method) ds_vecs() (reborn.detector.PADGeometry method) (reborn.detector.PADGeometryList method) DummyFrameGetter (class in reborn.viewers.qtviews.padviews) dx (reborn.target.crystal.CrystalDensityMap attribute) (reborn.target.density.DensityMap attribute) DynamicFilterLineEdit (class in reborn.viewers.pandaviews) DynamicFilterMenuAction (class in reborn.viewers.pandaviews)

E

e1_vec (reborn.source.Beam property) e2_vec (reborn.source.Beam property) edge_mask() (in module reborn.detector) (reborn.detector.PADGeometry method) (reborn.detector.PADGeometryList method) edit_geometry_widget (reborn.viewers.qtviews.padviews.PADView property) editor_widget (reborn.viewers.qtviews.padview_widgets.edit_beam.Widget attribute) (reborn.viewers.qtviews.padview_widgets.edit_geometry.Widget attribute) eiger4M_pad_geometry_list() (in module reborn.detector) ellipse_center() (in module reborn.analysis.optimize) ellipse_parameters() (in module reborn.analysis.optimize)

ellipsoid_form_factor() (in module reborn.simulate.form_factors) endDynamicFilter() (reborn.viewers.pandaviews.DataFrameModel method) energy_fluence (reborn.source.Beam property) ensure_list() (in module reborn.utils) EpicsTranslationStageMotion (class in reborn.external.lcls) epix100_pad_geometry_list() (in module reborn.detector) epix10k_pad_geometry_list() (in module reborn.detector) EuXFELFrameGetter (class in reborn.external.euxfel) event (reborn.external.lcls.LCLSFrameGetter attribute) event_codes (reborn.external.lcls.LCLSFrameGetter attribute) event_ids (reborn.external.lcls.LCLSFrameGetter attribute) extract_geom_from_stream() (in module reborn.external.crystfel)

F

f (reborn.misc.rotate.Rotate3D property) (reborn.misc.rotate.Rotate3DLinearShear property) (reborn.misc.rotate.Rotate3Dvkfft property) f2_to_photon_counts() (in module reborn.detector) f2phot() (reborn.detector.PADGeometry method) (reborn.detector.PADGeometryList method) factory() (reborn.fileio.getters.FrameGetter method) fgcache_checkbox_action() (reborn.viewers.qtviews.padview_widgets.display_options.Widget method) filter() (reborn.viewers.pandaviews.DataFrameModel method) (reborn.viewers.pandaviews.DataFrameWidget method) filterAcceptsColumn() (reborn.viewers.pandaviews.DataFrameSortFilterProxyModel method) filterAcceptsRow() (reborn.viewers.pandaviews.DataFrameSortFilterProxyModel method) filterFunction() (reborn.viewers.pandaviews.DataFrameModel method) filterIsIn() (reborn.viewers.pandaviews.DataFrameModel method) (reborn.viewers.pandaviews.DataFrameWidget method) FilterListMenuWidget (class in reborn.viewers.pandaviews) finalize() (reborn.analysis.parallel.ParallelAnalyzer method) (reborn.analysis.runstats.ParallelPADStats method) find_peaks() (reborn.analysis.peaks.MultiPADPeakFinder method) (reborn.analysis.peaks.PeakFinder method) find_proposal() (in module reborn.external.euxfel) FiniteCrystal (class in reborn.target.crystal) FiniteLattice (class in reborn.target.crystal) fit_ellipse() (in module reborn.analysis.optimize) fit_ellipse_pad() (in module reborn.analysis.optimize)

fit_gaussian_2d() (in module reborn.misc.correlate) fit_profile() (reborn.analysis.optimize.SphericalDroplets method) fix_cspad_cheetah_indexing() (in module reborn.external.crystfel) fix_current_levels() (reborn.viewers.qtviews.padview_widgets.display_editor.Widget method) flags() (reborn.viewers.pandaviews.DataFrameModel method) (reborn.viewers.qtviews.padview_widgets.ring_editor.RingTableModel method) float_tuple() (in module reborn.source) fluence (reborn.source.Beam property) focusInEvent() (reborn.viewers.pandaviews.DynamicFilterLineEdit method) fractional_coordinates (reborn.target.crystal.CrystalStructure attribute) frame_navigator_widget (reborn.viewers.qtviews.padviews.PADView property) FrameGetter (class in reborn.fileio.getters) FriedelPearsonCC (class in reborn.analysis.beam_center) from_dict() (reborn.analysis.parallel.ParallelAnalyzer method) (reborn.analysis.runstats.ParallelPADStats method) (reborn.analysis.runstats.PixelHistogram method) (reborn.analysis.saxs.ParallelRadialProfiler method) (reborn.analysis.saxs.QHistogram method) (reborn.detector.PADGeometry method) (reborn.source.Beam method) from_dict_list() (reborn.detector.PADGeometryList method) from_resolution() (reborn.misc.polar.PolarPADAssembler class method) fs_max (reborn.external.cheetah.CheetahFrameGetter attribute) fs_min (reborn.external.cheetah.CheetahFrameGetter attribute) fs_vec (reborn.detector.PADGeometry property)

G

gain_and_offset() (reborn.analysis.runstats.PixelHistogram method) gamma (reborn.target.crystal.UnitCell attribute) gaussian_2d() (in module reborn.misc.correlate) gaussian_lattice_transform_intensities() (reborn.simulate.clcore.ClCore method) gaussian_lattice_transform_intensities_pad() (reborn.simulate.clcore.ClCore method) generate_dataframe() (reborn.simulate.engines.SAXSPatternSimulator method) generate_pattern() (reborn.simulate.engines.MoleculePatternSimulator method) (reborn.simulate.engines.SAXSPatternSimulator method) (reborn.simulate.examples.CrystalSimulatorV1 method) (reborn.simulate.examples.MoleculeSimulatorV1 method) geom (reborn.simulate.examples.WaterFrameGetter attribute) geom_dict (reborn.fileio.getters.FrameGetter attribute) geometry_dict_to_pad_geometry_list() (in module reborn.external.crystfel) geometry_file_to_pad_geometry_list() (in module reborn.external.crystfel) geometry_updated() (reborn.viewers.qtviews.padview_widgets.edit_geometry.DirectEditor method) get_all_gpu_devices() (in module reborn.simulate.clcore) get_all_groups() (reborn.detector.PADGeometryList method) get_atomic_weights() (reborn.target.molecule.Molecule method) get_average_peak_locations() (reborn.analysis.runstats.PixelHistogram method) get_beam() (reborn.dataframe.DataFrame method) (reborn.viewers.qtviews.padview_widgets.edit_beam.Widget method) (reborn.viewers.qtviews.padviews.PADView method) get_bin_centers() (reborn.analysis.runstats.PixelHistogram method) (reborn.analysis.saxs.QHistogram method) get_by_name() (reborn.detector.PADGeometryList method) get_caller() (in module reborn.utils) get_centered_coordinates() (reborn.target.molecule.Molecule method) get_cmann_form_factors() (in module reborn.target.atoms) get_counts_profile() (reborn.analysis.saxs.RadialProfiler method) get_cromer_mann_densities() (in module reborn.target.atoms) get_cromermann_parameters() (in module reborn.target.atoms) get_crystal_structure() (in module reborn.external.denss) get_data() (reborn.external.cheetah.CheetahFrameGetter method) (reborn.external.crystfel.StreamfileFrameGetter method) (reborn.external.euxfel.EuXFELFrameGetter method) (reborn.external.lcls.LCLSFrameGetter method) (reborn.fileio.getters.FrameGetter method) (reborn.fileio.getters.ListFrameGetter method) (reborn.fileio.getters.TestFrameGetter method) (reborn.simulate.engines.SAXSPatternFrameGetter method) (reborn.simulate.examples.LysozymeFrameGetter method) (reborn.simulate.examples.WaterFrameGetter method) (reborn.viewers.qtviews.padviews.DummyFrameGetter method) get_data_split() (reborn.external.lcls.AreaDetector method) get_dataframe() (reborn.viewers.qtviews.padviews.PADView method) get_dataset_id() (reborn.dataframe.DataFrame method) get_denss_pdb() (in module reborn.external.denss) get_detector_type() (reborn.external.lcls.AreaDetector method) get_device_name() (reborn.simulate.clcore.ClCore method) get_event_ids() (in module reborn.external.lcls) get_first_frame() (reborn.fileio.getters.FrameGetter method) get_frame() (reborn.external.crystfel.StreamfileFrameGetter method) (reborn.fileio.getters.FrameGetter method) get_frame_id() (reborn.dataframe.DataFrame method) get_frame_index() (reborn.dataframe.DataFrame method) get_FSC() (in module reborn.utils) get_gain_and_offset() (in module reborn.analysis.runstats) get_gas_background() (in module reborn.simulate.gas) get_group() (reborn.detector.PADGeometryList method) get_group_indices() (reborn.detector.PADGeometryList method) get_group_names() (reborn.detector.PADGeometryList method) get_group_size() (reborn.simulate.clcore.ClCore method) get_histogram() (reborn.analysis.runstats.PixelHistogram method) (reborn.analysis.saxs.QHistogram method) get_histogram_normalized() (reborn.analysis.runstats.PixelHistogram method) get_history_next() (reborn.fileio.getters.FrameGetter method) get_history_previous() (reborn.fileio.getters.FrameGetter method) get_hm_symbols() (in module reborn.target.crystal) get_levels() (reborn.viewers.qtviews.padviews.PADView method) get_line() (reborn.external.pyqtgraph.ImView method)

get_mask() (reborn.analysis.masking.StreakMasker method) (reborn.external.lcls.AreaDetector method) (reborn.viewers.qtviews.padviews.PADView method) get_mask_color() (reborn.viewers.qtviews.padviews.PADView method) get_mask_flat() (reborn.dataframe.DataFrame method) get_mask_list() (reborn.dataframe.DataFrame method) get_mean_profile() (reborn.analysis.saxs.RadialProfiler method) get_median_profile() (reborn.analysis.runstats.PixelHistogram method) (reborn.analysis.saxs.RadialProfiler method) get_molecular_weight() (reborn.target.molecule.Molecule method) get_molecule() (in module reborn.target.molecule) get_next_frame() (reborn.fileio.getters.FrameGetter method) get_pad_coords_from_mouse_pos() (reborn.viewers.qtviews.padviews.PADView method) get_pad_coords_from_view_coords() (reborn.viewers.qtviews.padviews.PADView method) get_pad_display_data() (reborn.viewers.qtviews.padviews.PADView method) get_pad_geometry() (reborn.dataframe.DataFrame method) (reborn.external.lcls.AreaDetector method) (reborn.viewers.qtviews.padviews.PADView method) get_pad_geometry_from_psana() (in module reborn.external.lcls) get_pad_pixel_coordinates() (in module reborn.external.lcls) get_pad_solution_intensity() (in module reborn.simulate.solutions) get_padstats() (reborn.viewers.qtviews.padview_widgets.run_stats.Widget method) get_padview() (reborn.fileio.getters.FrameGetter method) get_pdb_file() (in module reborn.target.crystal) get_peaks() (reborn.external.cheetah.CheetahFrameGetter method) get_peaks_fast() (reborn.analysis.runstats.PixelHistogram method) get_pen() (reborn.gui.misc.pen_editor.PenStyleDialog method) (reborn.gui.misc.pen_editor.PenStyleEditor method) (reborn.gui.misc.pen_editor.PenStylePreview method) get_pixel_coordinates() (reborn.external.lcls.AreaDetector method) get_plot() (reborn.external.pyqtgraph.ImView method) get_polarization_angle() (in module reborn.viewers.qtviews.padview_widgets.edit_beam) get_polarization_factors_flat() (reborn.dataframe.DataFrame method) get_previous_frame() (reborn.fileio.getters.FrameGetter method) get_processed_data_flat() (reborn.dataframe.DataFrame method) get_processed_data_list() (reborn.dataframe.DataFrame method) get_profile_statistic() (reborn.analysis.saxs.RadialProfiler method) get_q_bin_centers() (reborn.analysis.saxs.QHistogram method) get_q_mags_flat() (reborn.dataframe.DataFrame method) get_q_mags_list() (reborn.dataframe.DataFrame method) get_q_vecs() (reborn.dataframe.DataFrame method) get_radial_profile() (in module reborn.detector) get_random_frame() (reborn.fileio.getters.FrameGetter method) get_raw_data_flat() (reborn.dataframe.DataFrame method) get_raw_data_list() (reborn.dataframe.DataFrame method) get_refined_gain_and_offset() (reborn.analysis.runstats.PixelHistogram method) get_roi() (reborn.external.pyqtgraph.ImView method) get_roi_slice() (reborn.external.pyqtgraph.ImView method) get_scattering_factors() (in module reborn.target.atoms) (reborn.target.molecule.Molecule method) get_scattering_factors_fixed_z() (in module reborn.target.atoms) get_scattering_profile() (in module reborn.external.denss) get_sdev_profile() (reborn.analysis.saxs.RadialProfiler method) get_setup_data() (in module reborn.analysis.parallel) get_shifted_geom() (reborn.analysis.beam_center.FriedelPearsonCC method) get_shifts() (reborn.analysis.beam_center.FriedelPearsonCC method) get_size() (reborn.target.molecule.Molecule method) get_solid_angles_flat() (reborn.dataframe.DataFrame method) get_sum_profile() (reborn.analysis.saxs.RadialProfiler method) get_sym_luts() (reborn.target.crystal.CrystalDensityMap method) get_symmetry_expanded_coordinates() (reborn.target.crystal.CrystalStructure method) get_symmetry_operators_from_hall_number() (in module reborn.target.crystal) get_symmetry_operators_from_space_group() (in module reborn.target.crystal) get_view_bounding_rect() (reborn.viewers.qtviews.padviews.PADView method) get_view_coords_from_mouse_pos() (reborn.viewers.qtviews.padviews.PADView method) get_water_profile() (in module reborn.simulate.solutions) GetMaskFileDialog (class in reborn.viewers.qtviews.padview_widgets.misc) git_sha() (in module reborn.utils) google_docstring_test() (in module reborn.utils) gradientChanged() (reborn.external.pyqtgraph.MultiHistogramLUTItem method)

H

h2q() (reborn.target.crystal.UnitCell method) h5_file (reborn.external.crystfel.StreamfileFrameGetter attribute) h5_file_path (reborn.external.crystfel.StreamfileFrameGetter attribute) h_limits (reborn.target.crystal.CrystalDensityMap property) h_max (reborn.target.crystal.CrystalDensityMap property) h_min (reborn.target.crystal.CrystalDensityMap property) h_vecs (reborn.target.crystal.CrystalDensityMap property) hall_number_from_hermann_mauguin_symbol() (in module reborn.target.crystal) hall_number_from_itoc_number() (in module reborn.target.crystal) has_beam() (reborn.dataframe.DataFrame method) hash (reborn.detector.PADGeometry property) (reborn.detector.PADGeometryList property) (reborn.source.Beam property) headerData() (reborn.viewers.pandaviews.DataFrameModel method) (reborn.viewers.qtviews.padview_widgets.ring_editor.RingTableModel method) help() (in module reborn.simulate.clcore) henke_dispersion_corrections() (in module reborn.target.atoms) henke_scattering_factors() (in module reborn.target.atoms) hermann_mauguin_symbol (reborn.target.crystal.SpaceGroup attribute) hermann_mauguin_symbol_from_hall_number() (in module reborn.target.crystal)

hermann_mauguin_symbol_from_itoc_number() (in module reborn.target.crystal) hide_coordinate_axes() (reborn.viewers.qtviews.padviews.PADView method) hide_fast_scan_directions() (reborn.viewers.qtviews.padviews.PADView method) hide_grid() (reborn.viewers.qtviews.padviews.PADView method) hide_masks() (reborn.viewers.qtviews.padviews.PADView method) hide_pad_border() (reborn.viewers.qtviews.padviews.PADView method) hide_pad_borders() (reborn.viewers.qtviews.padviews.PADView method) hide_pad_indices() (reborn.viewers.qtviews.padviews.PADView method) hide_pad_labels() (reborn.viewers.qtviews.padviews.PADView method) hide_rois() (reborn.viewers.qtviews.padviews.PADView method) histogram_widget() (reborn.viewers.qtviews.padviews.PADView method) history (reborn.fileio.getters.FrameGetter attribute) history_index (reborn.fileio.getters.FrameGetter attribute) history_length (reborn.fileio.getters.FrameGetter attribute) hold_beam (reborn.viewers.qtviews.padviews.PADView attribute) hold_levels (reborn.viewers.qtviews.padviews.PADView attribute) hold_mask (reborn.viewers.qtviews.padviews.PADView attribute) hold_pad_geometry (reborn.viewers.qtviews.padviews.PADView attribute) host (reborn.viewers.pandaviews.DynamicFilterLineEdit property) hubbel_form_factors() (in module reborn.target.atoms) hubbel_henke_scattering_factors() (in module reborn.target.atoms)

I

IcosphereGeometry (class in reborn.detector) ignore_masked_checkbox_action() (reborn.viewers.qtviews.padview_widgets.display_editor.Widget method) image() (in module reborn.external.pyqtgraph) ImageItemPlus (class in reborn.external.pyqtgraph) ImageWindow (class in reborn.external.pyqtgraph) import_plugin_module() (reborn.viewers.qtviews.padviews.PADView method) ImView (class in reborn.external.pyqtgraph) imview() (in module reborn.external.pyqtgraph) include_median (reborn.analysis.saxs.ParallelRadialProfiler attribute) indices_to_vectors() (reborn.detector.PADGeometry method) init_params (reborn.fileio.getters.FrameGetter attribute) initialize() (reborn.simulate.engines.SAXSPatternSimulator method)

initialize_data() (reborn.analysis.runstats.ParallelPADStats method) initUI() (reborn.gui.misc.pen_editor.PenStyleDialog method) insert() (reborn.target.placer.Place method) insertRow() (reborn.viewers.qtviews.padview_widgets.ring_editor.RingTableModel method) inspect_available_data() (in module reborn.external.euxfel) is_dark (reborn.dataframe.DataFrame property) is_different() (reborn.detector.PADGeometry method) (reborn.detector.PADGeometryList method) (reborn.source.Beam method) is_sorted (reborn.fileio.getters.FrameGetter property) isotropic_gas_intensity_profile() (in module reborn.simulate.gas) itoc_number_from_hall_number() (in module reborn.target.crystal) itoc_number_from_hermann_mauguin_symbol() (in module reborn.target.crystal)

J

jungfrau4m_pad_geometry_list() (in module reborn.detector)

K

k_in (reborn.source.Beam property) k_to_au() (reborn.target.crystal.CrystalDensityMap method)

kabsch() (in module reborn.misc.rotate) keep_open() (in module reborn.external.pyqtgraph) keyPressEvent() (reborn.viewers.pandaviews.DataFrameWidget method)

L

label() (in module reborn.viewers.qtviews.padview_widgets.frame_navigator) labels (reborn.analysis.peaks.PeakFinder attribute) lattice_transform_intensities_pad() (reborn.simulate.clcore.ClCore method) lattices (reborn.target.crystal.FiniteCrystal attribute) LCLSFrameGetter (class in reborn.external.lcls) lines (reborn.external.pyqtgraph.ImView attribute) ListFrameGetter (class in reborn.fileio.getters) load() (reborn.analysis.parallel.ParallelAnalyzer method) (reborn.detector.PADGeometryList method) (reborn.source.Beam method) load_analysis_from_h5() (in module reborn.external.hdf5) load_analysis_key_from_h5() (in module reborn.external.hdf5) load_beam() (in module reborn.source) (reborn.viewers.qtviews.padviews.PADView method) load_beam_from_h5() (in module reborn.external.hdf5) load_crystfel_geometry() (in module reborn.external.crystfel) load_cxidb_file() (reborn.external.cheetah.CheetahFrameGetter method) load_dataframe_from_h5() (in module reborn.external.hdf5) load_json() (reborn.detector.PADGeometry method) (reborn.source.Beam method)

load_masks() (reborn.viewers.qtviews.padviews.PADView method) load_metadata_from_h5() (in module reborn.external.hdf5) load_npy_file() (reborn.viewers.qtviews.padviews.PADView method) load_pad_data_from_h5() (in module reborn.external.hdf5) load_pad_geometry() (reborn.viewers.qtviews.padviews.PADView method) load_pad_geometry_from_h5() (in module reborn.external.hdf5) load_pad_geometry_list() (in module reborn.detector) load_pad_masks() (in module reborn.detector) load_padstats() (in module reborn.analysis.runstats) load_pickle() (in module reborn.fileio.misc) load_pickled_dataframe() (in module reborn.dataframe) (reborn.viewers.qtviews.padviews.PADView method) load_profiles() (in module reborn.analysis.saxs) load_xyz() (in module reborn.fileio.misc) log_to_terminal() (in module reborn.utils) lower_fixed_checkbox_action() (reborn.viewers.qtviews.padview_widgets.display_editor.Widget method) lower_fixed_spinbox_action() (reborn.viewers.qtviews.padview_widgets.display_editor.Widget method) lower_percentile_checkbox_action() (reborn.viewers.qtviews.padview_widgets.display_editor.Widget method) lower_percentile_spinbox_action() (reborn.viewers.qtviews.padview_widgets.display_editor.Widget method) lysozyme_molecule() (in module reborn.simulate.examples) LysozymeFrameGetter (class in reborn.simulate.examples)

M

make_cell_context_menu() (reborn.viewers.pandaviews.DataFrameWidget method) make_hexagonal_prism() (reborn.target.crystal.FiniteCrystal method) (reborn.target.crystal.FiniteLattice method) make_label_radial_shell() (in module reborn.utils) make_parallelepiped() (reborn.target.crystal.FiniteCrystal method) (reborn.target.crystal.FiniteLattice method) make_plan() (reborn.analysis.saxs.RadialProfiler method) make_sphere() (reborn.target.crystal.FiniteLattice method) MapProjection() (in module reborn.viewers.qtviews.qtviews) MapSlices() (in module reborn.viewers.qtviews.qtviews) mask (reborn.analysis.peaks.PeakFinder attribute) (reborn.external.euxfel.EuXFELFrameGetter attribute) (reborn.external.lcls.LCLSFrameGetter attribute) mask_editor_widget (reborn.viewers.qtviews.padviews.PADView property) mask_pads_by_names() (reborn.viewers.qtviews.padview_widgets.mask_editor.Widget method) mask_panel_edges() (reborn.viewers.qtviews.padview_widgets.mask_editor.Widget method) masked_pearson_cc_2d() (in module reborn.misc.correlate) max_atomic_pair_distance (reborn.target.molecule.Molecule property) MAX_HISTORY (reborn.viewers.qtviews.padview_widgets.mask_editor.Widget attribute) max_pair_distance() (in module reborn.misc.vectors) (in module reborn.utils) max_resolution() (reborn.detector.PADGeometry method) (reborn.detector.PADGeometryList method) memoize() (in module reborn.utils) mesh_interpolation() (reborn.simulate.clcore.ClCore method) mirror_checkbox_action() (reborn.viewers.qtviews.padview_widgets.display_editor.Widget method) mod_squared_complex_to_real() (reborn.simulate.clcore.ClCore method) modify_geometry() (reborn.external.lcls.EpicsTranslationStageMotion method) (reborn.external.lcls.TranslationMotion method) module reborn reborn.analysis reborn.analysis.beam_center reborn.analysis.masking reborn.analysis.optimize reborn.analysis.parallel reborn.analysis.peaks reborn.analysis.runstats reborn.analysis.saxs reborn.analysis.svd reborn.config reborn.const reborn.dataframe reborn.detector reborn.external reborn.external.cheetah reborn.external.crystfel reborn.external.denss reborn.external.euxfel reborn.external.hdf5 reborn.external.lcls reborn.external.pyqt reborn.external.pyqtgraph reborn.fileio reborn.fileio.getters reborn.fileio.misc reborn.gui reborn.gui.misc reborn.gui.misc.pen_editor reborn.gui.misc.spinbox reborn.misc reborn.misc.correlate reborn.misc.interpolate reborn.misc.polar reborn.misc.rotate reborn.misc.spherical reborn.misc.vectors reborn.simulate reborn.simulate.clcore reborn.simulate.engines reborn.simulate.examples reborn.simulate.form_factors reborn.simulate.gas reborn.simulate.solutions reborn.source reborn.target reborn.target.atoms reborn.target.crystal reborn.target.density reborn.target.molecule reborn.target.placer reborn.utils reborn.viewers reborn.viewers.mplviews reborn.viewers.mplviews.padviews reborn.viewers.pandaviews reborn.viewers.qtviews reborn.viewers.qtviews.padview_widgets reborn.viewers.qtviews.padview_widgets.display_editor reborn.viewers.qtviews.padview_widgets.display_options reborn.viewers.qtviews.padview_widgets.edit_beam reborn.viewers.qtviews.padview_widgets.edit_geometry reborn.viewers.qtviews.padview_widgets.frame_navigator reborn.viewers.qtviews.padview_widgets.mask_editor reborn.viewers.qtviews.padview_widgets.misc reborn.viewers.qtviews.padview_widgets.ring_editor reborn.viewers.qtviews.padview_widgets.run_stats reborn.viewers.qtviews.padview_widgets.swaxs_simulator reborn.viewers.qtviews.padviews reborn.viewers.qtviews.qtviews

Molecule (class in reborn.target.molecule) molecule (reborn.target.crystal.CrystalStructure attribute) MoleculePatternSimulator (class in reborn.simulate.engines) MoleculeSimulatorV1 (class in reborn.simulate.examples) mosaic_domain_size (reborn.target.crystal.CrystalStructure attribute) mosaic_domain_size_fwhm (reborn.target.crystal.CrystalStructure attribute) mosaicity_fwhm (reborn.target.crystal.CrystalStructure attribute) motions (reborn.external.lcls.AreaDetector attribute) mouse_moved() (reborn.viewers.qtviews.padviews.PADView method) mousePressEvent() (reborn.gui.misc.pen_editor.PenStylePreview method) mpccd_pad_geometry_list() (in module reborn.detector) MultiHistogramLUTItem (class in reborn.external.pyqtgraph) MultiHistogramLUTWidget (class in reborn.external.pyqtgraph) MultiPADPeakFinder (class in reborn.analysis.peaks)

N

n_atoms (reborn.target.molecule.Molecule attribute) n_bins (reborn.analysis.runstats.PixelHistogram attribute) (reborn.analysis.saxs.QHistogram attribute) (reborn.analysis.saxs.RadialProfiler attribute) n_frames (reborn.external.crystfel.StreamfileFrameGetter attribute) (reborn.fileio.getters.FrameGetter property) n_fs (reborn.detector.PADGeometry property) n_labels (reborn.analysis.peaks.PeakFinder attribute) n_molecules (reborn.target.crystal.SpaceGroup property) n_operations (reborn.target.crystal.SpaceGroup property) n_pads (reborn.dataframe.DataFrame property) n_photons (reborn.source.Beam property) n_pixels (reborn.detector.PADGeometry property) (reborn.detector.PADGeometryList property) (reborn.external.lcls.AreaDetector property)

n_q_bins (reborn.analysis.saxs.QHistogram attribute) n_ss (reborn.detector.PADGeometry property) n_subdivisions (reborn.detector.IcosphereGeometry attribute) n_trains (reborn.external.euxfel.EuXFELFrameGetter attribute) n_vecs (reborn.target.crystal.CrystalDensityMap property) (reborn.target.density.DensityMap property) n_voxels (reborn.target.density.DensityMap attribute) name (reborn.detector.PADGeometry property) next() (reborn.simulate.examples.PDBMoleculeSimulator method) norm_vec() (reborn.detector.PADGeometry method) normalize_profile_stats() (in module reborn.analysis.saxs)

O

o_mat (reborn.target.crystal.UnitCell property) o_mat_inv (reborn.target.crystal.UnitCell property) occupancies (reborn.target.molecule.Molecule attribute) occupied_r_coordinates (reborn.target.crystal.FiniteLattice property) occupied_x_coordinates (reborn.target.crystal.FiniteLattice property) on_change() (reborn.gui.misc.pen_editor.PenStyleEditor method) on_list_itemChanged() (reborn.viewers.pandaviews.FilterListMenuWidget method)

on_ok_button_clicked() (reborn.gui.misc.pen_editor.PenStyleDialog method) ones() (reborn.detector.PADGeometry method) (reborn.detector.PADGeometryList method) open_data_file_dialog() (reborn.viewers.qtviews.padviews.PADView method) open_editor() (reborn.viewers.qtviews.padview_widgets.edit_geometry.Widget method) oversampling (reborn.target.crystal.CrystalDensityMap attribute) overwrite (reborn.viewers.qtviews.padview_widgets.misc.GetMaskFileDialog property)

P

p_bin_indices() (in module reborn.misc.polar) pad_to_asic_data_split() (in module reborn.external.lcls) PADAssembler (class in reborn.detector) PADGeometry (class in reborn.detector) PADGeometryList (class in reborn.detector) padstats_completed() (reborn.viewers.qtviews.padview_widgets.run_stats.Widget method) padstats_framegetter() (in module reborn.analysis.runstats) PADView (class in reborn.viewers.qtviews.padviews) PADViewMainWindow (class in reborn.viewers.qtviews.padviews) paint() (reborn.viewers.pandaviews.DataFrameItemDelegate method) (reborn.viewers.qtviews.padview_widgets.ring_editor.QPenDelegate method) paintEvent() (reborn.gui.misc.pen_editor.PenStylePreview method) pandas_dataframe (reborn.fileio.getters.FrameGetter property) panel_scatter_plot() (reborn.viewers.qtviews.padviews.PADView method) ParallelAnalyzer (class in reborn.analysis.parallel) ParallelPADStats (class in reborn.analysis.runstats) ParallelRadialProfiler (class in reborn.analysis.saxs) parameters (reborn.dataframe.DataFrame attribute) parent_data_shape (reborn.detector.PADGeometry property) (reborn.detector.PADGeometryList property) parent_data_slice (reborn.detector.PADGeometry property) particles_in_a_cylinder() (in module reborn.target.placer) particles_in_a_sphere() (in module reborn.target.placer) pdb_dict (reborn.target.crystal.CrystalStructure attribute) pdb_to_dict() (in module reborn.target.crystal) PDBMoleculeSimulator (class in reborn.simulate.examples) PeakFinder (class in reborn.analysis.peaks) pearson_friedel_shift() (in module reborn.misc.correlate) pen_dialog() (in module reborn.gui.misc.pen_editor) pens (in module reborn.viewers.qtviews.qtviews) PenStyleDialog (class in reborn.gui.misc.pen_editor) PenStyleEditor (class in reborn.gui.misc.pen_editor) PenStylePreview (class in reborn.gui.misc.pen_editor) phase_factor_mesh() (reborn.simulate.clcore.ClCore method) phase_factor_pad() (reborn.simulate.clcore.ClCore method) phase_factor_qrf() (in module reborn.simulate.clcore) (reborn.simulate.clcore.ClCore method) phi (reborn.misc.spherical.ylmIntegration attribute) photon_energy (reborn.source.Beam attribute) photon_energy_fwhm (reborn.source.Beam attribute) photon_number_fluence (reborn.source.Beam property)

pick_directory() (reborn.viewers.qtviews.padview_widgets.swaxs_simulator.Widget method) pick_file() (reborn.viewers.qtviews.padview_widgets.swaxs_simulator.Widget method) pilatus100k_pad_geometry_list() (in module reborn.detector) pixel_corner_position_vecs() (reborn.detector.PADGeometry method) (reborn.detector.PADGeometryList method) pixel_size() (reborn.detector.PADGeometry method) PixelHistogram (class in reborn.analysis.runstats) Place (class in reborn.target.placer) place_atoms_in_map() (in module reborn.target.crystal) (reborn.target.crystal.CrystalDensityMap method) place_spheres() (in module reborn.target.placer) plan_masked_pearson_cc_2d() (in module reborn.misc.correlate) plot_multiple_images() (in module reborn.viewers.qtviews.qtviews) plot_single_column() (reborn.viewers.pandaviews.DataFrameWidget method) plots (reborn.external.pyqtgraph.ImView attribute) pnccd_pad_geometry_list() (in module reborn.detector) poisson() (reborn.detector.PADGeometry method) (reborn.detector.PADGeometryList method) polarization_factors (reborn.dataframe.DataFrame property) polarization_factors() (in module reborn.detector) (reborn.detector.PADGeometry method) (reborn.detector.PADGeometryList method) polarization_vec (reborn.source.Beam property) polarization_weight (reborn.source.Beam property) PolarPADAssembler (class in reborn.detector) (class in reborn.misc.polar) position_vecs() (reborn.detector.PADGeometry method) (reborn.detector.PADGeometryList method) postprocessors (reborn.fileio.getters.FrameGetter attribute) print_all_loggers_and_handlers() (in module reborn.utils) print_device_info() (in module reborn.simulate.clcore) (reborn.simulate.clcore.ClCore method) process_framegetter() (reborn.analysis.runstats.PixelHistogram method) (reborn.analysis.saxs.QHistogram method) process_frames() (reborn.analysis.parallel.ParallelAnalyzer method) processed_data (reborn.dataframe.DataFrame property) profiler (reborn.analysis.saxs.ParallelRadialProfiler attribute) pulse_energy (reborn.source.Beam property) pulse_energy_fwhm (reborn.source.Beam attribute) push() (in module reborn.viewers.qtviews.padview_widgets.frame_navigator) pv (reborn.viewers.qtviews.padview_widgets.run_stats.Widget attribute)

Q

q2h() (reborn.target.crystal.UnitCell method) q_bin_centers (reborn.analysis.saxs.RadialProfiler property) q_bin_indices() (in module reborn.misc.polar) q_edge_range (reborn.analysis.saxs.RadialProfiler attribute) q_mags (reborn.dataframe.DataFrame property) q_mags() (reborn.detector.PADGeometry method) (reborn.detector.PADGeometryList method) q_max (reborn.target.crystal.CrystalDensityMap property)

q_min (reborn.target.crystal.CrystalDensityMap property) q_range (reborn.analysis.saxs.RadialProfiler attribute) q_vecs (reborn.dataframe.DataFrame property) (reborn.target.crystal.CrystalDensityMap property) q_vecs() (reborn.detector.PADGeometry method) (reborn.detector.PADGeometryList method) QHistogram (class in reborn.analysis.saxs) QPenDelegate (class in reborn.viewers.qtviews.padview_widgets.ring_editor) quickstats() (reborn.analysis.saxs.RadialProfiler method)

R

r2x() (reborn.target.crystal.UnitCell method) radial_stats() (in module reborn.utils) RadialProfiler (class in reborn.analysis.saxs) (class in reborn.detector) radials (reborn.analysis.saxs.ParallelRadialProfiler attribute) radii (reborn.analysis.peaks.PeakFinder attribute) radius (reborn.detector.IcosphereGeometry attribute) random() (reborn.detector.PADGeometry method) (reborn.detector.PADGeometryList method) random_beam_vector() (in module reborn.utils) random_rotation() (in module reborn.utils) random_unit_vector() (in module reborn.utils) raw_data (reborn.dataframe.DataFrame property) RawDataRole (reborn.viewers.pandaviews.DataFrameModel attribute) RawIndexRole (reborn.viewers.pandaviews.DataFrameModel attribute) rayonix_mx340_xfel_pad_geometry_list() (in module reborn.detector) readStreamfile_get_nth_frame() (in module reborn.external.crystfel) readStreamfile_get_total_number_of_frames() (in module reborn.external.crystfel) reborn module reborn.analysis module reborn.analysis.beam_center module reborn.analysis.masking module reborn.analysis.optimize module reborn.analysis.parallel module reborn.analysis.peaks module reborn.analysis.runstats module reborn.analysis.saxs module reborn.analysis.svd module reborn.config module reborn.const module reborn.dataframe module reborn.detector module reborn.external module reborn.external.cheetah module reborn.external.crystfel module reborn.external.denss module reborn.external.euxfel module reborn.external.hdf5 module reborn.external.lcls module reborn.external.pyqt module reborn.external.pyqtgraph module reborn.fileio module reborn.fileio.getters module reborn.fileio.misc module reborn.gui module reborn.gui.misc module reborn.gui.misc.pen_editor module reborn.gui.misc.spinbox module reborn.misc module reborn.misc.correlate module reborn.misc.interpolate module reborn.misc.polar module reborn.misc.rotate module reborn.misc.spherical module reborn.misc.vectors module reborn.simulate module reborn.simulate.clcore module reborn.simulate.engines module reborn.simulate.examples module reborn.simulate.form_factors module

reborn.simulate.gas module reborn.simulate.solutions module reborn.source module reborn.target module reborn.target.atoms module reborn.target.crystal module reborn.target.density module reborn.target.molecule module reborn.target.placer module reborn.utils module reborn.viewers module reborn.viewers.mplviews module reborn.viewers.mplviews.padviews module reborn.viewers.pandaviews module reborn.viewers.qtviews module reborn.viewers.qtviews.padview_widgets module reborn.viewers.qtviews.padview_widgets.display_editor module reborn.viewers.qtviews.padview_widgets.display_options module reborn.viewers.qtviews.padview_widgets.edit_beam module reborn.viewers.qtviews.padview_widgets.edit_geometry module reborn.viewers.qtviews.padview_widgets.frame_navigator module reborn.viewers.qtviews.padview_widgets.mask_editor module reborn.viewers.qtviews.padview_widgets.misc module reborn.viewers.qtviews.padview_widgets.ring_editor module reborn.viewers.qtviews.padview_widgets.run_stats module reborn.viewers.qtviews.padview_widgets.swaxs_simulator module reborn.viewers.qtviews.padviews module reborn.viewers.qtviews.qtviews module redo() (reborn.viewers.qtviews.padview_widgets.mask_editor.Widget method) regionChanged() (reborn.external.pyqtgraph.MultiHistogramLUTItem method) regionChanging() (reborn.external.pyqtgraph.MultiHistogramLUTItem method) reload_current_frame() (reborn.viewers.qtviews.padviews.PADView method) reload_dataframe() (reborn.viewers.qtviews.padview_widgets.display_options.Widget method) remove_hydrogen_atoms() (reborn.target.molecule.Molecule method) remove_rings() (reborn.viewers.qtviews.padviews.PADView method) remove_scatter_plots() (reborn.viewers.qtviews.padviews.PADView method) remove_selected_rows() (reborn.viewers.qtviews.padview_widgets.ring_editor.RingEditWidget method) removeRow() (reborn.viewers.qtviews.padview_widgets.ring_editor.RingTableModel method) render() (reborn.external.pyqtgraph.ImageItemPlus method) reset() (reborn.viewers.pandaviews.DataFrameModel method) reset_occupancies() (reborn.target.crystal.FiniteCrystal method) (reborn.target.crystal.FiniteLattice method) reshape() (reborn.detector.PADGeometry method) (reborn.detector.PADGeometryList method) reshape_psana_cspad_array_to_cheetah_array() (in module reborn.external.cheetah) reshape_psana_pnccd_array_to_cheetah_array() (in module reborn.external.cheetah) resource_path() (in module reborn.utils) ring_editor_widget (reborn.viewers.qtviews.padviews.PADView property) RingEditWidget (class in reborn.viewers.qtviews.padview_widgets.ring_editor) RingTableModel (class in reborn.viewers.qtviews.padview_widgets.ring_editor) RingTypeDelegate (class in reborn.viewers.qtviews.padview_widgets.ring_editor) rois (reborn.external.pyqtgraph.ImView attribute) rotate() (reborn.detector.PADGeometry method) (reborn.detector.PADGeometryList method) Rotate3D (class in reborn.misc.rotate) Rotate3Dlegacy (class in reborn.misc.rotate) Rotate3DLinearShear (class in reborn.misc.rotate) Rotate3Dvkfft (class in reborn.misc.rotate) rotate_translate_vectors() (reborn.simulate.clcore.ClCore method) rotate_x() (reborn.viewers.qtviews.padview_widgets.edit_geometry.Widget method) rotate_y() (reborn.viewers.qtviews.padview_widgets.edit_geometry.Widget method) rotate_z() (reborn.viewers.qtviews.padview_widgets.edit_geometry.Widget method) rotation() (reborn.misc.rotate.Rotate3D method) (reborn.misc.rotate.Rotate3Dlegacy method) (reborn.misc.rotate.Rotate3DLinearShear method) (reborn.misc.rotate.Rotate3Dvkfft method) rotation_about_axis() (in module reborn.utils) row_copy() (reborn.viewers.qtviews.padview_widgets.ring_editor.RingTableModel method) rowCount() (reborn.viewers.pandaviews.DataFrameModel method) (reborn.viewers.qtviews.padview_widgets.ring_editor.RingTableModel method) run() (reborn.viewers.qtviews.padview_widgets.run_stats.Worker method) (reborn.viewers.qtviews.padview_widgets.swaxs_simulator.Widget method) run_id (reborn.fileio.getters.FrameGetter attribute) run_plugin() (reborn.viewers.qtviews.padviews.PADView method) runstats_widget (reborn.viewers.qtviews.padviews.PADView property)

S

s_vecs() (reborn.detector.PADGeometry method) (reborn.detector.PADGeometryList method) save() (reborn.analysis.parallel.ParallelAnalyzer method) (reborn.detector.PADGeometryList method) (reborn.source.Beam method) save_analysis_as_h5() (in module reborn.external.hdf5) save_beam() (in module reborn.source) (reborn.viewers.qtviews.padviews.PADView method) save_beam_as_h5() (in module reborn.external.hdf5) save_data_file_dialog() (reborn.viewers.qtviews.padviews.PADView method) save_dataframe_as_h5() (in module reborn.external.hdf5) save_file_dialog() (reborn.viewers.qtviews.padviews.PADView method) save_json() (reborn.detector.PADGeometry method) (reborn.detector.PADGeometryList method) (reborn.source.Beam method) save_mask_as_om_h5() (in module reborn.detector) save_masks() (reborn.viewers.qtviews.padviews.PADView method) save_metadata_as_h5() (in module reborn.external.hdf5) save_npy_file() (reborn.viewers.qtviews.padviews.PADView method) save_pad_data_as_h5() (in module reborn.external.hdf5) save_pad_geometry() (reborn.viewers.qtviews.padviews.PADView method) save_pad_geometry_as_h5() (in module reborn.external.hdf5) save_pad_geometry_list() (in module reborn.detector) save_pad_masks() (in module reborn.detector) save_padstats() (in module reborn.analysis.runstats) save_pickle() (in module reborn.fileio.misc) save_pickled_dataframe() (in module reborn.dataframe) (reborn.viewers.qtviews.padviews.PADView method) save_profiles() (in module reborn.analysis.saxs) save_screenshot() (reborn.viewers.qtviews.padviews.PADView method) save_screenshot_dialog() (reborn.viewers.qtviews.padviews.PADView method) SAXSPatternFrameGetter (class in reborn.simulate.engines) SAXSPatternSimulator (class in reborn.simulate.engines) Scatter3D (class in reborn.viewers.qtviews.qtviews) scatter_plot() (in module reborn.viewers.qtviews.qtviews) scattering_angles() (reborn.detector.PADGeometry method) (reborn.detector.PADGeometryList method) set_average_detector_distance() (reborn.detector.PADGeometry method) (reborn.detector.PADGeometryList method) set_beam() (reborn.analysis.saxs.RadialProfiler method) (reborn.dataframe.DataFrame method) (reborn.viewers.qtviews.padviews.PADView method) set_color() (reborn.gui.misc.pen_editor.PenStyleEditor method) set_colormap() (reborn.viewers.qtviews.padviews.PADView method) set_dataframe() (reborn.viewers.pandaviews.DataFrameModel method) (reborn.viewers.qtviews.padviews.PADView method) set_dataset_id() (reborn.dataframe.DataFrame method) set_frame_id() (reborn.dataframe.DataFrame method) set_frame_index() (reborn.dataframe.DataFrame method) set_gaussian_disorder() (reborn.target.crystal.FiniteCrystal method) (reborn.target.crystal.FiniteLattice method) set_group() (reborn.detector.PADGeometryList method) set_groupsize() (reborn.simulate.clcore.ClCore method) set_levels() (reborn.viewers.qtviews.padviews.PADView method) set_mask() (reborn.analysis.saxs.RadialProfiler method) (reborn.dataframe.DataFrame method) (reborn.external.pyqtgraph.ImView method) (reborn.viewers.qtviews.padviews.PADView method) set_mask_color() (reborn.viewers.qtviews.padviews.PADView method) set_orthographic_projection() (reborn.viewers.qtviews.qtviews.Scatter3D method) set_pad_display_data() (reborn.viewers.qtviews.padviews.PADView method) set_pad_geometry() (reborn.analysis.saxs.RadialProfiler method) (reborn.dataframe.DataFrame method) (reborn.viewers.qtviews.padviews.PADView method) set_pandas_dataframe() (reborn.fileio.getters.FrameGetter method) set_pen() (reborn.gui.misc.pen_editor.PenStyleDialog method) (reborn.gui.misc.pen_editor.PenStyleEditor method) set_polarization_angle() (in module reborn.viewers.qtviews.padview_widgets.edit_beam) set_processed_data() (reborn.dataframe.DataFrame method) set_raw_data() (reborn.dataframe.DataFrame method) set_shortcut() (reborn.viewers.qtviews.padviews.PADView method) set_sorted_indices() (reborn.fileio.getters.FrameGetter method) set_style() (reborn.gui.misc.pen_editor.PenStyleEditor method) set_tight_packing() (reborn.target.crystal.CrystalStructure method) set_title() (reborn.viewers.qtviews.padviews.PADView method) set_width() (reborn.gui.misc.pen_editor.PenStyleEditor method) set_width_from_edit() (reborn.gui.misc.pen_editor.PenStyleEditor method) setData() (reborn.viewers.qtviews.padview_widgets.ring_editor.RingTableModel method) setDataFrame() (reborn.viewers.pandaviews.DataFrameWidget method) setEditorData() (reborn.viewers.qtviews.padview_widgets.ring_editor.QPenDelegate method) (reborn.viewers.qtviews.padview_widgets.ring_editor.RingTypeDelegate method) setFilterFixedString() (reborn.viewers.pandaviews.DataFrameSortFilterProxyModel method) setFilterFunction() (reborn.viewers.pandaviews.DataFrameSortFilterProxyModel method) setFilterList() (reborn.viewers.pandaviews.DataFrameSortFilterProxyModel method) setFilterRegExp() (reborn.viewers.pandaviews.DataFrameSortFilterProxyModel method) setFilterString() (reborn.viewers.pandaviews.DataFrameSortFilterProxyModel method) setFilterWildcard() (reborn.viewers.pandaviews.DataFrameSortFilterProxyModel method) setImage() (reborn.external.pyqtgraph.ImView method) setImageItems() (reborn.external.pyqtgraph.MultiHistogramLUTItem method) setLevelMode() (reborn.external.pyqtgraph.MultiHistogramLUTItem method) setModelData() (reborn.viewers.pandaviews.DataFrameItemDelegate method) (reborn.viewers.qtviews.padview_widgets.ring_editor.QPenDelegate method) (reborn.viewers.qtviews.padview_widgets.ring_editor.RingTypeDelegate method) setSourceModel() (reborn.viewers.pandaviews.DataFrameSortFilterProxyModel method) setup_motions() (reborn.external.lcls.AreaDetector method) setValueSilently() (reborn.gui.misc.spinbox.BetterDoubleSpinBox method) shape (reborn.target.crystal.CrystalDensityMap attribute) (reborn.target.density.DensityMap attribute)

shape() (reborn.detector.PADGeometry method) shift_x() (reborn.viewers.qtviews.padview_widgets.edit_geometry.Widget method) shift_y() (reborn.viewers.qtviews.padview_widgets.edit_geometry.Widget method) shift_z() (reborn.viewers.qtviews.padview_widgets.edit_geometry.Widget method) show() (reborn.viewers.qtviews.padviews.PADView method) (reborn.viewers.qtviews.qtviews.Scatter3D method) (reborn.viewers.qtviews.qtviews.Volumetric3D method) show_and_raise() (in module reborn.viewers.qtviews.padviews) show_coordinate_axes() (reborn.viewers.qtviews.padviews.PADView method) show_fast_scan_directions() (reborn.viewers.qtviews.padviews.PADView method) show_first_frame() (reborn.viewers.qtviews.padviews.PADView method) show_frame() (reborn.viewers.qtviews.padview_widgets.frame_navigator.Widget method) (reborn.viewers.qtviews.padviews.PADView method) show_grid() (reborn.viewers.qtviews.padviews.PADView method) show_histogram (reborn.viewers.qtviews.padviews.PADView attribute) show_history_next() (reborn.viewers.qtviews.padviews.PADView method) show_history_previous() (reborn.viewers.qtviews.padviews.PADView method) show_masks() (reborn.viewers.qtviews.padviews.PADView method) show_next_frame() (reborn.viewers.qtviews.padview_widgets.frame_navigator.Widget method) (reborn.viewers.qtviews.padviews.PADView method) show_pad_border() (reborn.viewers.qtviews.padviews.PADView method) show_pad_borders() (reborn.viewers.qtviews.padviews.PADView method) show_pad_indices() (reborn.viewers.qtviews.padviews.PADView method) show_pad_labels() (reborn.viewers.qtviews.padviews.PADView method) show_padstats() (reborn.viewers.qtviews.padview_widgets.run_stats.Widget method) show_previous_frame() (reborn.viewers.qtviews.padview_widgets.frame_navigator.Widget method) (reborn.viewers.qtviews.padviews.PADView method) show_random_frame() (reborn.viewers.qtviews.padviews.PADView method) show_rois() (reborn.viewers.qtviews.padviews.PADView method) sig_beam_changed (reborn.viewers.qtviews.padviews.PADView attribute) sig_dataframe_changed (reborn.viewers.qtviews.padviews.PADView attribute) sig_geometry_changed (reborn.viewers.qtviews.padviews.PADView attribute) signal (reborn.analysis.peaks.PeakFinder attribute) simple_setup() (reborn.detector.PADGeometry method) simulate_water() (in module reborn.simulate.examples) size (reborn.target.crystal.CrystalDensityMap attribute) sizeHint() (reborn.external.pyqtgraph.MultiHistogramLUTWidget method) (reborn.viewers.qtviews.padview_widgets.ring_editor.QPenDelegate method) skip_empty_frames (reborn.fileio.getters.FrameGetter attribute) (reborn.viewers.qtviews.padviews.PADView attribute) skip_peaks (reborn.external.cheetah.CheetahFrameGetter attribute) slice_from_parent() (reborn.detector.PADGeometry method) snr (reborn.analysis.peaks.PeakFinder attribute) snr_filter() (in module reborn.analysis.masking) (in module reborn.analysis.peaks) snr_filter_test() (in module reborn.analysis.masking) snr_mask() (in module reborn.analysis.masking) (in module reborn.analysis.peaks) snr_threshold (reborn.analysis.peaks.PeakFinder attribute) solid_angles (reborn.dataframe.DataFrame property) solid_angles() (reborn.detector.PADGeometry method) (reborn.detector.PADGeometryList method) solid_angles1() (reborn.detector.PADGeometry method) (reborn.detector.PADGeometryList method) solid_angles2() (reborn.detector.PADGeometry method) (reborn.detector.PADGeometryList method) sort() (reborn.viewers.pandaviews.DataFrameModel method) (reborn.viewers.pandaviews.DataFrameSortFilterProxyModel method) sort_by() (reborn.fileio.getters.FrameGetter method) SpaceGroup (class in reborn.target.crystal) spacegroup (reborn.target.crystal.CrystalStructure attribute) spacegroup_ops_from_hall_number() (in module reborn.target.crystal) spacegroup_symbol (reborn.target.crystal.SpaceGroup attribute) spacings (reborn.target.density.DensityMap attribute) sphere_form_factor() (in module reborn.simulate.form_factors) (reborn.simulate.clcore.ClCore method) SphericalDroplets (class in reborn.analysis.optimize) spheroid_form_factor() (in module reborn.simulate.form_factors) split_data() (reborn.dataframe.DataFrame method) (reborn.detector.PADGeometryList method) split_data_block() (in module reborn.external.crystfel) split_image() (in module reborn.external.crystfel) split_pad() (reborn.external.lcls.AreaDetector method) split_pad_data() (in module reborn.detector) splitter (reborn.external.lcls.AreaDetector attribute) ss_max (reborn.external.cheetah.CheetahFrameGetter attribute) ss_min (reborn.external.cheetah.CheetahFrameGetter attribute) ss_vec (reborn.detector.PADGeometry property) start() (reborn.viewers.qtviews.padviews.PADView method) stats (reborn.viewers.qtviews.padview_widgets.run_stats.Widget attribute) stats() (in module reborn.misc.polar) (reborn.misc.polar.PolarPADAssembler method) stepBy() (reborn.gui.misc.spinbox.BetterDoubleSpinBox method) stop() (reborn.viewers.qtviews.padviews.PADView method) streak_mask() (reborn.detector.PADGeometry method) (reborn.detector.PADGeometryList method) StreakMasker (class in reborn.analysis.masking) StreamfileFrameGetter (class in reborn.external.crystfel) strides (reborn.target.crystal.CrystalDensityMap attribute) (reborn.target.density.DensityMap attribute) subtract_median_profile() (reborn.analysis.saxs.RadialProfiler method) subtract_pad_friedel_mate() (in module reborn.detector) subtract_profile() (reborn.analysis.saxs.RadialProfiler method) super_initialized (reborn.analysis.parallel.ParallelAnalyzer attribute) swaxs_simulator_widget (reborn.viewers.qtviews.padviews.PADView property) sym_luts (reborn.target.crystal.CrystalDensityMap attribute) sym_rotations (reborn.target.crystal.SpaceGroup attribute) sym_translations (reborn.target.crystal.SpaceGroup attribute) symmetry_transform() (reborn.target.crystal.CrystalDensityMap method)

T

t_vec (reborn.detector.PADGeometry property) terminate_thread() (reborn.viewers.qtviews.padview_widgets.run_stats.Widget method) test_atomic_add_int() (reborn.simulate.clcore.ClCore method) test_atomic_add_real() (reborn.simulate.clcore.ClCore method) test_rotate_vec() (reborn.simulate.clcore.ClCore method) test_simple_sum() (reborn.simulate.clcore.ClCore method) TestFrameGetter (class in reborn.fileio.getters) text() (in module reborn.viewers.qtviews.padview_widgets.frame_navigator) textFromValue() (reborn.gui.misc.spinbox.BetterDoubleSpinBox method) theta (reborn.misc.spherical.ylmIntegration attribute) thickness (reborn.simulate.examples.WaterFrameGetter attribute) threadlocked() (in module reborn.fileio.getters) tic() (reborn.viewers.qtviews.padviews.PADView method) tiled_pad_geometry_list() (in module reborn.detector) to_device() (reborn.simulate.clcore.ClCore method) to_dict() (reborn.analysis.parallel.ParallelAnalyzer method) (reborn.analysis.runstats.ParallelPADStats method) (reborn.analysis.runstats.PixelHistogram method) (reborn.analysis.saxs.ParallelRadialProfiler method) (reborn.analysis.saxs.QHistogram method) (reborn.detector.PADGeometry method) (reborn.source.Beam method)

to_dict_list() (reborn.detector.PADGeometryList method) toc() (reborn.viewers.qtviews.padviews.PADView method) toggle_coordinate_axes() (reborn.viewers.qtviews.padviews.PADView method) toggle_fast_scan_directions() (reborn.viewers.qtviews.padviews.PADView method) toggle_grid() (reborn.viewers.qtviews.padviews.PADView method) toggle_masks() (reborn.viewers.qtviews.padviews.PADView method) toggle_pad_indices() (reborn.viewers.qtviews.padviews.PADView method) toggle_pad_labels() (reborn.viewers.qtviews.padviews.PADView method) toggle_play() (reborn.viewers.qtviews.padview_widgets.frame_navigator.Widget method) toggle_rois() (reborn.viewers.qtviews.padviews.PADView method) translate() (reborn.detector.PADGeometry method) (reborn.detector.PADGeometryList method) TranslationMotion (class in reborn.external.lcls) triangle_solid_angle() (in module reborn.utils) trilinear_insert() (in module reborn.misc.interpolate) trilinear_insertion() (in module reborn.misc.interpolate) (in module reborn.target.density) trilinear_insertion_factor() (in module reborn.misc.interpolate) (in module reborn.target.density) trilinear_insertions() (in module reborn.misc.interpolate) (in module reborn.target.density) trilinear_interpolation() (in module reborn.misc.interpolate) (in module reborn.target.density)

U

undo() (reborn.viewers.qtviews.padview_widgets.mask_editor.Widget method) UnitCell (class in reborn.target.crystal) unitcell (reborn.target.crystal.CrystalStructure attribute) unsplit_image() (in module reborn.external.crystfel) update_beam() (reborn.viewers.qtviews.padviews.PADView method) update_dataframe() (reborn.viewers.qtviews.padviews.PADView method) update_detector_distance() (reborn.external.euxfel.EuXFELFrameGetter method) update_diameter() (reborn.viewers.qtviews.padview_widgets.edit_beam.Widget method) update_display() (reborn.viewers.qtviews.padviews.PADView method) update_displayed_values() (reborn.viewers.qtviews.padview_widgets.edit_beam.Widget method) update_geometry() (reborn.viewers.qtviews.padview_widgets.edit_geometry.DirectEditor method) update_masks() (reborn.viewers.qtviews.padviews.PADView method) update_n_photons() (reborn.viewers.qtviews.padview_widgets.edit_beam.Widget method) update_pad_geometry() (reborn.viewers.qtviews.padviews.PADView method)

update_pads() (reborn.viewers.qtviews.padviews.PADView method) update_pen() (reborn.gui.misc.pen_editor.PenStylePreview method) update_photon_energy() (reborn.viewers.qtviews.padview_widgets.edit_beam.Widget method) update_polarization() (reborn.viewers.qtviews.padview_widgets.edit_beam.Widget method) update_polarization_weight() (reborn.viewers.qtviews.padview_widgets.edit_beam.Widget method) update_pulse_energy() (reborn.viewers.qtviews.padview_widgets.edit_beam.Widget method) update_rings() (reborn.viewers.qtviews.padview_widgets.ring_editor.RingEditWidget method) (reborn.viewers.qtviews.padviews.PADView method) update_wavelength() (reborn.viewers.qtviews.padview_widgets.edit_beam.Widget method) updateEditorGeometry() (reborn.viewers.qtviews.padview_widgets.ring_editor.QPenDelegate method) upper_fixed_checkbox_action() (reborn.viewers.qtviews.padview_widgets.display_editor.Widget method) upper_fixed_spinbox_action() (reborn.viewers.qtviews.padview_widgets.display_editor.Widget method) upper_percentile_checkbox_action() (reborn.viewers.qtviews.padview_widgets.display_editor.Widget method) upper_percentile_spinbox_action() (reborn.viewers.qtviews.padview_widgets.display_editor.Widget method)

V

validate() (reborn.dataframe.DataFrame method) (reborn.detector.PADGeometry method) (reborn.detector.PADGeometryList method) (reborn.gui.misc.spinbox.BetterDoubleSpinBox method) (reborn.source.Beam method) valueFromText() (reborn.gui.misc.spinbox.BetterDoubleSpinBox method) vec16() (reborn.simulate.clcore.ClCore method) vec4() (reborn.simulate.clcore.ClCore method) vec_mag() (in module reborn.utils) vec_norm() (in module reborn.utils) vec_shape() (in module reborn.utils) vector_coords_to_2d_display_coords() (reborn.viewers.qtviews.padviews.PADView method) vector_to_view_coords() (reborn.viewers.qtviews.padviews.PADView static method)

vectors_to_indices() (reborn.detector.PADGeometry method) view() (reborn.fileio.getters.FrameGetter method) (reborn.target.molecule.Molecule method) view_density_map() (in module reborn.viewers.qtviews.qtviews) view_finite_crystal() (in module reborn.viewers.qtviews.qtviews) view_pad_data() (in module reborn.viewers.mplviews.padviews) (in module reborn.viewers.qtviews.padviews) view_padstats() (in module reborn.analysis.runstats) view_pandas_dataframe() (in module reborn.viewers.pandaviews) view_polar_data() (in module reborn.viewers.mplviews.padviews) view_profile_runstats() (in module reborn.analysis.saxs) volume (reborn.target.crystal.UnitCell property) Volumetric3D (class in reborn.viewers.qtviews.qtviews) voxel_volume (reborn.target.crystal.CrystalDensityMap property)

W

water_number_density() (in module reborn.simulate.solutions) water_scattering_factor_squared() (in module reborn.simulate.solutions) WaterFrameGetter (class in reborn.simulate.examples) wavelength (reborn.source.Beam property) Widget (class in reborn.viewers.qtviews.padview_widgets.display_editor) (class in reborn.viewers.qtviews.padview_widgets.display_options) (class in reborn.viewers.qtviews.padview_widgets.edit_beam) (class in reborn.viewers.qtviews.padview_widgets.edit_geometry) (class in reborn.viewers.qtviews.padview_widgets.frame_navigator) (class in reborn.viewers.qtviews.padview_widgets.mask_editor) (class in reborn.viewers.qtviews.padview_widgets.run_stats) (class in reborn.viewers.qtviews.padview_widgets.swaxs_simulator) (in module reborn.viewers.qtviews.padview_widgets.ring_editor)

WidgetedCell (class in reborn.viewers.pandaviews) Worker (class in reborn.viewers.qtviews.padview_widgets.run_stats) worker (reborn.viewers.qtviews.padview_widgets.run_stats.Widget attribute) write_file_md5() (in module reborn.utils) write_geom_file_from_pad_geometry_list() (in module reborn.external.crystfel) write_geom_file_from_template() (in module reborn.external.crystfel) write_geom_file_single_pad() (in module reborn.external.crystfel)

X

x (reborn.target.crystal.CrystalStructure property) x2r() (reborn.target.crystal.UnitCell method) x_limits (reborn.target.crystal.CrystalDensityMap property) x_max (reborn.target.crystal.CrystalDensityMap property) x_min (reborn.target.crystal.CrystalDensityMap property)

x_vecs (reborn.target.crystal.CrystalDensityMap property) (reborn.target.crystal.CrystalStructure property) xraylib_refractive_index() (in module reborn.target.atoms) xraylib_scattering_density() (in module reborn.target.atoms) xraylib_scattering_factors() (in module reborn.target.atoms)

Y

ylmIntegration (class in reborn.misc.spherical)

Z

zeros() (reborn.detector.PADGeometry method) (reborn.detector.PADGeometryList method)