Package APIΒΆ
- reborn package
- Subpackages
- reborn.analysis package
- Submodules
- reborn.analysis.beam_center module
- reborn.analysis.masking module
- reborn.analysis.optimize module
- reborn.analysis.parallel module
- reborn.analysis.peaks module
- reborn.analysis.runstats module
PixelHistogramPixelHistogram.countPixelHistogram.bin_minPixelHistogram.bin_maxPixelHistogram.n_binsPixelHistogram.to_dictPixelHistogram.from_dictPixelHistogram.concatentatePixelHistogram.get_bin_centersPixelHistogram.get_histogram_normalizedPixelHistogram.get_histogramPixelHistogram.add_framePixelHistogram.get_peaks_fastPixelHistogram.get_average_peak_locationsPixelHistogram.gain_and_offsetPixelHistogram.get_refined_gain_and_offsetPixelHistogram.correct_gain_and_offsetPixelHistogram.convert_to_q_histogramPixelHistogram.get_median_profilePixelHistogram.process_framegetter
ParallelPADStatssave_padstatsload_padstatspadstats_framegetterview_padstatsget_gain_and_offset
- reborn.analysis.saxs module
debug_messageQHistogramRadialProfilerRadialProfiler.n_binsRadialProfiler.q_rangeRadialProfiler.q_edge_rangeRadialProfiler.bin_centersRadialProfiler.bin_edgesRadialProfiler.bin_sizeRadialProfiler.set_maskRadialProfiler.set_beamRadialProfiler.set_pad_geometryRadialProfiler.q_bin_centersRadialProfiler.make_planRadialProfiler.concat_dataRadialProfiler.get_profile_statisticRadialProfiler.get_counts_profileRadialProfiler.get_sum_profileRadialProfiler.get_mean_profileRadialProfiler.get_median_profileRadialProfiler.get_sdev_profileRadialProfiler.subtract_profileRadialProfiler.divide_profileRadialProfiler.subtract_median_profileRadialProfiler.quickstats
ParallelRadialProfilersave_profilesload_profilesview_profile_runstatsnormalize_profile_stats
- reborn.analysis.svd module
- Module contents
- reborn.external package
- Submodules
- reborn.external.cheetah module
- reborn.external.crystfel module
load_crystfel_geometrygeometry_dict_to_pad_geometry_listfix_cspad_cheetah_indexingextract_geom_from_streamgeometry_file_to_pad_geometry_listsplit_data_blocksplit_imageunsplit_imagewrite_geom_file_single_padwrite_geom_file_from_templateconvert_to_crystfel_formatwrite_geom_file_from_pad_geometry_listreadStreamfile_get_total_number_of_framesreadStreamfile_get_nth_frameStreamfileFrameGetter
- reborn.external.denss module
- reborn.external.euxfel module
- reborn.external.hdf5 module
- reborn.external.lcls module
- reborn.external.pyqt module
- reborn.external.pyqtgraph module
- Module contents
- reborn.fileio package
- Submodules
- reborn.fileio.getters module
do_nothingthreadlockedFrameGetterFrameGetter.run_idFrameGetter.current_frameFrameGetter.current_random_frameFrameGetter.current_dataframeFrameGetter.geom_dictFrameGetter.history_lengthFrameGetter.historyFrameGetter.history_indexFrameGetter.init_paramsFrameGetter.skip_empty_framesFrameGetter.postprocessorsFrameGetter.factoryFrameGetter.n_framesFrameGetter.dbgmsgFrameGetter.get_dataFrameGetter.pandas_dataframeFrameGetter.set_pandas_dataframeFrameGetter.sort_byFrameGetter.set_sorted_indicesFrameGetter.is_sortedFrameGetter.get_frameFrameGetter.get_history_previousFrameGetter.get_history_nextFrameGetter.get_next_frameFrameGetter.get_previous_frameFrameGetter.get_random_frameFrameGetter.get_first_frameFrameGetter.viewFrameGetter.get_padview
ListFrameGetterTestFrameGetter
- reborn.fileio.misc module
- Module contents
- reborn.gui package
- reborn.misc package
- reborn.simulate package
- Submodules
- reborn.simulate.clcore module
get_all_gpu_devicescreate_some_gpu_contextClCoreClCore.get_device_nameClCore.print_device_infoClCore.set_groupsizeClCore.double_precision_is_availableClCore.vec4ClCore.vec16ClCore.to_deviceClCore.get_group_sizeClCore.rotate_translate_vectorsClCore.test_rotate_vecClCore.test_simple_sumClCore.mod_squared_complex_to_realClCore.sphere_form_factorClCore.phase_factor_qrfClCore.phase_factor_padClCore.phase_factor_meshClCore.buffer_mesh_lookupClCore.mesh_interpolationClCore.lattice_transform_intensities_padClCore.gaussian_lattice_transform_intensities_padClCore.gaussian_lattice_transform_intensitiesClCore.test_atomic_add_realClCore.test_atomic_add_intClCore.divide_nonzero_inplace
phase_factor_qrfprint_device_infohelp
- reborn.simulate.engines module
- reborn.simulate.examples module
- reborn.simulate.form_factors module
- reborn.simulate.gas module
- reborn.simulate.solutions module
- Module contents
- reborn.target package
- Submodules
- reborn.target.atoms module
atomic_symbols_to_numbersatomic_numbers_to_symbolshenke_scattering_factorshenke_dispersion_correctionsget_scattering_factorsget_scattering_factors_fixed_zxraylib_scattering_factorsxraylib_refractive_indexxraylib_scattering_densityhubbel_form_factorshubbel_henke_scattering_factorscmann_henke_scattering_factorscromer_mann_scattering_factorsget_cmann_form_factorsget_cromermann_parametersget_cromer_mann_densities
- reborn.target.crystal module
get_pdb_fileUnitCellUnitCell.aUnitCell.bUnitCell.cUnitCell.alphaUnitCell.betaUnitCell.gammaUnitCell.o_matUnitCell.o_mat_invUnitCell.a_matUnitCell.a_mat_invUnitCell.volumeUnitCell.r2xUnitCell.x2rUnitCell.q2hUnitCell.h2qUnitCell.a_vecUnitCell.b_vecUnitCell.c_vecUnitCell.as_vecUnitCell.bs_vecUnitCell.cs_vec
SpaceGroupCrystalStructureCrystalStructure.mosaicity_fwhmCrystalStructure.crystal_sizeCrystalStructure.crystal_size_fwhmCrystalStructure.mosaic_domain_sizeCrystalStructure.mosaic_domain_size_fwhmCrystalStructure.cryst1CrystalStructure.pdb_dictCrystalStructure.unitcellCrystalStructure.spacegroupCrystalStructure.fractional_coordinatesCrystalStructure.moleculeCrystalStructure.x_vecsCrystalStructure.xCrystalStructure.get_symmetry_expanded_coordinatesCrystalStructure.set_tight_packing
FiniteLatticeCrystalDensityMapCrystalDensityMap.sym_lutsCrystalDensityMap.crystCrystalDensityMap.oversamplingCrystalDensityMap.dxCrystalDensityMap.cshapeCrystalDensityMap.shapeCrystalDensityMap.sizeCrystalDensityMap.stridesCrystalDensityMap.n_vecsCrystalDensityMap.x_vecsCrystalDensityMap.x_limitsCrystalDensityMap.x_minCrystalDensityMap.x_maxCrystalDensityMap.h_vecsCrystalDensityMap.h_limitsCrystalDensityMap.h_minCrystalDensityMap.h_maxCrystalDensityMap.q_vecsCrystalDensityMap.q_minCrystalDensityMap.q_maxCrystalDensityMap.get_sym_lutsCrystalDensityMap.au_to_kCrystalDensityMap.k_to_auCrystalDensityMap.symmetry_transformCrystalDensityMap.place_atoms_in_mapCrystalDensityMap.voxel_volume
build_atomic_scattering_density_mapplace_atoms_in_mappdb_to_dictFiniteCrystalget_hm_symbolshermann_mauguin_symbol_from_hall_numberitoc_number_from_hall_numberhall_number_from_hermann_mauguin_symbolitoc_number_from_hermann_mauguin_symbolhall_number_from_itoc_numberhermann_mauguin_symbol_from_itoc_numberspacegroup_ops_from_hall_numberget_symmetry_operators_from_hall_numberget_symmetry_operators_from_space_group
- reborn.target.density module
- reborn.target.molecule module
MoleculeMolecule.atomic_numbersMolecule.n_atomsMolecule.occupanciesMolecule.coordinatesMolecule.get_scattering_factorsMolecule.max_atomic_pair_distanceMolecule.get_sizeMolecule.get_molecular_weightMolecule.get_centered_coordinatesMolecule.get_atomic_weightsMolecule.viewMolecule.remove_hydrogen_atoms
get_molecule
- reborn.target.placer module
- Module contents
- reborn.viewers package
- Subpackages
- reborn.viewers.mplviews package
- reborn.viewers.qtviews package
- Subpackages
- reborn.viewers.qtviews.padview_widgets package
- Submodules
- reborn.viewers.qtviews.padview_widgets.display_editor module
WidgetWidget.fix_current_levelsWidget.upper_fixed_checkbox_actionWidget.upper_fixed_spinbox_actionWidget.upper_percentile_checkbox_actionWidget.upper_percentile_spinbox_actionWidget.lower_fixed_checkbox_actionWidget.lower_fixed_spinbox_actionWidget.lower_percentile_checkbox_actionWidget.lower_percentile_spinbox_actionWidget.mirror_checkbox_actionWidget.ignore_masked_checkbox_action
- reborn.viewers.qtviews.padview_widgets.display_options module
- reborn.viewers.qtviews.padview_widgets.edit_beam module
- reborn.viewers.qtviews.padview_widgets.edit_geometry module
- reborn.viewers.qtviews.padview_widgets.frame_navigator module
- reborn.viewers.qtviews.padview_widgets.mask_editor module
- reborn.viewers.qtviews.padview_widgets.misc module
- reborn.viewers.qtviews.padview_widgets.ring_editor module
- reborn.viewers.qtviews.padview_widgets.run_stats module
- reborn.viewers.qtviews.padview_widgets.swaxs_simulator module
- Module contents
- reborn.viewers.qtviews.padview_widgets package
- Submodules
- reborn.viewers.qtviews.padviews module
PADViewMainWindowPADViewPADView.show_histogramPADView.downsample_functionPADView.hold_pad_geometryPADView.hold_beamPADView.hold_maskPADView.hold_levelsPADView.skip_empty_framesPADView.sig_geometry_changedPADView.sig_beam_changedPADView.sig_dataframe_changedPADView.debugPADView.get_pad_geometryPADView.set_pad_geometryPADView.get_dataframePADView.set_dataframePADView.get_beamPADView.set_beamPADView.get_maskPADView.set_maskPADView.get_pad_display_dataPADView.set_pad_display_dataPADView.set_titlePADView.set_shortcutPADView.set_colormapPADView.get_levelsPADView.set_levelsPADView.add_rectangle_roiPADView.add_circle_roiPADView.show_roisPADView.hide_roisPADView.toggle_roisPADView.show_coordinate_axesPADView.hide_coordinate_axesPADView.toggle_coordinate_axesPADView.show_fast_scan_directionsPADView.hide_fast_scan_directionsPADView.toggle_fast_scan_directionsPADView.show_pad_labelsPADView.hide_pad_labelsPADView.toggle_pad_labelsPADView.show_pad_indicesPADView.hide_pad_indicesPADView.toggle_pad_indicesPADView.choose_mask_colorPADView.get_mask_colorPADView.set_mask_colorPADView.update_masksPADView.hide_masksPADView.show_masksPADView.toggle_masksPADView.save_masksPADView.load_masksPADView.clear_masksPADView.clear_processed_dataPADView.update_padsPADView.update_pad_geometryPADView.update_beamPADView.update_dataframePADView.update_displayPADView.save_pad_geometryPADView.load_pad_geometryPADView.save_beamPADView.load_beamPADView.vector_to_view_coordsPADView.get_pad_coords_from_view_coordsPADView.get_pad_coords_from_mouse_posPADView.get_view_coords_from_mouse_posPADView.get_view_bounding_rectPADView.mouse_movedPADView.add_ringPADView.update_ringsPADView.remove_ringsPADView.show_gridPADView.hide_gridPADView.toggle_gridPADView.show_pad_borderPADView.hide_pad_borderPADView.show_pad_bordersPADView.hide_pad_bordersPADView.show_history_nextPADView.show_history_previousPADView.show_next_framePADView.show_previous_framePADView.show_random_framePADView.show_framePADView.show_first_framePADView.reload_current_framePADView.add_plot_itemPADView.add_scatter_plotPADView.remove_scatter_plotsPADView.load_pickled_dataframePADView.save_pickled_dataframePADView.load_npy_filePADView.save_npy_filePADView.open_data_file_dialogPADView.save_data_file_dialogPADView.vector_coords_to_2d_display_coordsPADView.panel_scatter_plotPADView.display_editor_widgetPADView.mask_editor_widgetPADView.frame_navigator_widgetPADView.ring_editor_widgetPADView.runstats_widgetPADView.display_options_widgetPADView.edit_geometry_widgetPADView.swaxs_simulator_widgetPADView.beam_editor_widgetPADView.import_plugin_modulePADView.run_pluginPADView.startPADView.stopPADView.showPADView.save_screenshot_dialogPADView.save_screenshotPADView.save_file_dialogPADView.ticPADView.tocPADView.histogram_widget
view_pad_dataDummyFrameGettershow_and_raise
- reborn.viewers.qtviews.qtviews module
- Module contents
- Subpackages
- Submodules
- reborn.viewers.pandaviews module
WidgetedCellDataFrameModelDataFrameModel.RawDataRoleDataFrameModel.RawIndexRoleDataFrameModel.set_dataframeDataFrameModel.dfDataFrameModel.beginDynamicFilterDataFrameModel.endDynamicFilterDataFrameModel.cancelDynamicFilterDataFrameModel.headerDataDataFrameModel.dataDataFrameModel.flagsDataFrameModel.rowCountDataFrameModel.columnCountDataFrameModel.sortDataFrameModel.filterDataFrameModel.filterIsInDataFrameModel.filterFunctionDataFrameModel.reset
DataFrameSortFilterProxyModelDataFrameSortFilterProxyModel.setSourceModelDataFrameSortFilterProxyModel.sortDataFrameSortFilterProxyModel.setFilterStringDataFrameSortFilterProxyModel.setFilterListDataFrameSortFilterProxyModel.setFilterFunctionDataFrameSortFilterProxyModel.dfDataFrameSortFilterProxyModel.filterAcceptsRowDataFrameSortFilterProxyModel.filterAcceptsColumnDataFrameSortFilterProxyModel.setFilterRegExpDataFrameSortFilterProxyModel.setFilterWildcardDataFrameSortFilterProxyModel.setFilterFixedString
DynamicFilterLineEditDynamicFilterMenuActionFilterListMenuWidgetDataFrameItemDelegateDataFrameWidgetDataFrameWidget.dataFrameChangedDataFrameWidget.cellClickedDataFrameWidget.make_cell_context_menuDataFrameWidget.contextMenuEventDataFrameWidget.plot_single_columnDataFrameWidget.setDataFrameDataFrameWidget.filterDataFrameWidget.filterIsInDataFrameWidget.dfDataFrameWidget.keyPressEventDataFrameWidget.copyDataFrameWidget.custom_filter
DataFrameAppview_pandas_dataframe
- Module contents
- Subpackages
- reborn.analysis package
- Submodules
- reborn.config module
- reborn.const module
- reborn.dataframe module
DataFrameDataFrame.parametersDataFrame.validateDataFrame.copyDataFrame.is_darkDataFrame.has_beamDataFrame.concat_dataDataFrame.split_dataDataFrame.n_padsDataFrame.raw_dataDataFrame.processed_dataDataFrame.q_magsDataFrame.q_vecsDataFrame.solid_anglesDataFrame.polarization_factorsDataFrame.clear_cacheDataFrame.get_frame_indexDataFrame.set_frame_indexDataFrame.get_dataset_idDataFrame.set_dataset_idDataFrame.get_frame_idDataFrame.set_frame_idDataFrame.get_beamDataFrame.set_beamDataFrame.get_pad_geometryDataFrame.set_pad_geometryDataFrame.get_raw_data_listDataFrame.get_raw_data_flatDataFrame.set_raw_dataDataFrame.get_mask_listDataFrame.get_mask_flatDataFrame.set_maskDataFrame.get_processed_data_listDataFrame.get_processed_data_flatDataFrame.set_processed_dataDataFrame.clear_processed_dataDataFrame.get_q_vecsDataFrame.get_q_mags_flatDataFrame.get_q_mags_listDataFrame.get_solid_angles_flatDataFrame.get_polarization_factors_flat
save_pickled_dataframeload_pickled_dataframe
- reborn.detector module
cachedclear_cachePADGeometryPADGeometry.do_cachePADGeometry.hashPADGeometry.validatePADGeometry.clear_cachePADGeometry.namePADGeometry.n_fsPADGeometry.n_ssPADGeometry.n_pixelsPADGeometry.fs_vecPADGeometry.ss_vecPADGeometry.t_vecPADGeometry.parent_data_slicePADGeometry.parent_data_shapePADGeometry.is_differentPADGeometry.slice_from_parentPADGeometry.change_parent_shapePADGeometry.to_dictPADGeometry.from_dictPADGeometry.copyPADGeometry.save_jsonPADGeometry.load_jsonPADGeometry.simple_setupPADGeometry.pixel_sizePADGeometry.shapePADGeometry.indices_to_vectorsPADGeometry.vectors_to_indicesPADGeometry.pixel_corner_position_vecsPADGeometry.position_vecsPADGeometry.center_pos_vecPADGeometry.average_detector_distancePADGeometry.set_average_detector_distancePADGeometry.norm_vecPADGeometry.s_vecsPADGeometry.ds_vecsPADGeometry.q_vecsPADGeometry.ds_magsPADGeometry.q_magsPADGeometry.solid_anglesPADGeometry.solid_angles1PADGeometry.solid_angles2PADGeometry.polarization_factorsPADGeometry.scattering_anglesPADGeometry.azimuthal_anglesPADGeometry.streak_maskPADGeometry.edge_maskPADGeometry.beamstop_maskPADGeometry.f2photPADGeometry.reshapePADGeometry.zerosPADGeometry.onesPADGeometry.randomPADGeometry.poissonPADGeometry.max_resolutionPADGeometry.corner_position_vectorsPADGeometry.binnedPADGeometry.translatePADGeometry.rotate
PADGeometryListPADGeometryList.do_cachePADGeometryList.appendPADGeometryList.copyPADGeometryList.hashPADGeometryList.validatePADGeometryList.is_differentPADGeometryList.to_dict_listPADGeometryList.from_dict_listPADGeometryList.clear_cachePADGeometryList.savePADGeometryList.loadPADGeometryList.add_groupPADGeometryList.get_group_indicesPADGeometryList.get_groupPADGeometryList.set_groupPADGeometryList.get_all_groupsPADGeometryList.get_group_namesPADGeometryList.get_by_namePADGeometryList.assign_namesPADGeometryList.defines_slicingPADGeometryList.parent_data_shapePADGeometryList.change_parent_shapePADGeometryList.reshapePADGeometryList.concat_dataPADGeometryList.split_dataPADGeometryList.concat_vecsPADGeometryList.n_pixelsPADGeometryList.save_jsonPADGeometryList.position_vecsPADGeometryList.pixel_corner_position_vecsPADGeometryList.average_detector_distancePADGeometryList.set_average_detector_distancePADGeometryList.s_vecsPADGeometryList.ds_vecsPADGeometryList.q_vecsPADGeometryList.q_magsPADGeometryList.solid_anglesPADGeometryList.solid_angles1PADGeometryList.solid_angles2PADGeometryList.polarization_factorsPADGeometryList.scattering_anglesPADGeometryList.f2photPADGeometryList.azimuthal_anglesPADGeometryList.beamstop_maskPADGeometryList.edge_maskPADGeometryList.streak_maskPADGeometryList.zerosPADGeometryList.onesPADGeometryList.randomPADGeometryList.poissonPADGeometryList.max_resolutionPADGeometryList.binnedPADGeometryList.translatePADGeometryList.rotatePADGeometryList.center_at_origin
f2_to_photon_countssave_pad_geometry_listload_pad_geometry_listtiled_pad_geometry_listconcat_pad_datasplit_pad_dataedge_masksubtract_pad_friedel_matePADAssemblerIcosphereGeometryPolarPADAssemblerRadialProfilerpolarization_factorsget_radial_profilesave_mask_as_om_h5save_pad_masksload_pad_maskspnccd_pad_geometry_listcspad_pad_geometry_listcspad_2x2_pad_geometry_listjungfrau4m_pad_geometry_listepix10k_pad_geometry_listepix100_pad_geometry_listmpccd_pad_geometry_listagipd_pad_geometry_listrayonix_mx340_xfel_pad_geometry_listeiger4M_pad_geometry_listpilatus100k_pad_geometry_listdict_default
- reborn.source module
BeamBeam.photon_energy_fwhmBeam.divergence_fwhmBeam.pulse_energy_fwhmBeam.photon_energyBeam.diameter_fwhmBeam.validateBeam.hashBeam.beam_profileBeam.beam_vecBeam.k_inBeam.polarization_vecBeam.e1_vecBeam.e2_vecBeam.polarization_weightBeam.wavelengthBeam.pulse_energyBeam.n_photonsBeam.fluenceBeam.photon_number_fluenceBeam.energy_fluenceBeam.is_differentBeam.to_dictBeam.from_dictBeam.copyBeam.save_jsonBeam.load_jsonBeam.saveBeam.load
load_beamsave_beamfloat_tuple
- reborn.utils module
log_to_terminalprint_all_loggers_and_handlersresource_pathdocsensure_listvec_normvec_magvec_shaperandom_rotationrotation_about_axisrandom_unit_vectorrandom_beam_vectortriangle_solid_anglememoizemax_pair_distancemake_label_radial_shellradial_statsget_FSCatleast_1datleast_2datleast_3datleast_4dbinned_statisticget_callercheck_file_md5write_file_md5git_shagoogle_docstring_test
- Module contents
- Subpackages